Publications

Spatially resolved transcriptomics and graph-based deep learning improve accuracy of routine CNS tumor diagnostics

M. Ritter, C. Blume, Yiheng Tang, A. Patel, B. Patel, N. Berghaus, Jasim Kada Benotmane, J. Kueckelhaus, Y. Yabo, Junyi Zhang, E. Grabis, Giulia Villa, David Niklas Zimmer, Amir Khriesh, P. Sievers, Z. Seferbekova, F. Hinz, V. Ravi, M. Seiz-Rosenhagen, M. Ratliff, C. Herold-Mende, Oliver Schnell, J. Beck, Wolfgang Wick, Andreas von Deimling, M. Gerstung, D. Heiland, F. Sahm

Nature Cancer, vol. 6(2), 2025, pp. 292-306

P01.03.A DECIPHERING THE TUMOUR ECOSYSTEM IN GLIOMAS USING SPATIAL TRANSCRIPTOMICS

Z. Seferbekova, D. Calafato, G. Rukhovich, A. Patel, M. Ritter, F. Ippen, A. Suwala, F. Sahm, M. Gerstung

Neuro-Oncology, vol. 26(Supplement_5), 2024, pp. v30-v31

Single-cell and spatial transcriptomics analysis of non-small cell lung cancer

Marco De Zuani, Haoliang Xue, Jun Sung Park, S. Dentro, Z. Seferbekova, Julien Tessier, Sandra Curras-Alonso, Angela Hadjipanayis, E. Athanasiadis, M. Gerstung, O. Bayraktar, A. Cvejic

Nature Communications, 2024

OS10.8.A APPLICATIONS OF NOVEL FFPE BASED TECHNOLOGIES FOR THE DIAGNOSTICS OF GLIOMAS

M. Ritter, C. Blume, B. Patel, Y. Tang, A. Patel, N. Berghaus, Z. Seferbekova, P. Sievers, C. Herold‐Mende, W. Wick, M. Gerstung, A. von Deimling, F. Sahm

Neuro-Oncology, 2023

PATH-13. APPLICATIONS OF SPATIAL TRANSCRIPTOMICS FOR THE DIAGNOSTICS OF GLIOMAS

M. Ritter, C. Blume, Yiheng Tang, B. Patel, A. Patel, P. Sievers, Z. Seferbekova, N. Berghaus, C. Herold‐Mende, W. Wick, M. Gerstung, A. von Deimling, D. Heiland, F. Sahm

Neuro-Oncology, 2023

PATH-46. COMPUTATIONAL HISTOPATHOLOGY INFORMED RAPID TARGETED NANOPORE SEQUENCING ENABLES AFFORDABLE NEXT DAY REPORTING OF COMPREHENSIVE MOLECULAR MARKERS FOR CNS TUMOUR DIAGNOSTICS

A. Patel, H. Dogan, Alexander W. Jung, Z. Seferbekova, A. Payne, M. Ritter, D. Schrimpf, D. Stichel, Stefan Hamelmann, C. Blume, P. Euskirchen, V. Goidts, M. Sill, S. Pfister, M. Loose, W. Wick, A. von Deimling, David C. Jones, M. Schlesner, M. Gerstung, F. Sahm

Neuro-Oncology, 2022

Spatial biology of cancer evolution

Z. Seferbekova, A. Lomakin, L. Yates, M. Gerstung

Nature reviews genetics, 2022

High Rates of Genome Rearrangements and Pathogenicity of Shigella spp.

Z. Seferbekova, Alexey Zabelkin, Yulia Yakovleva, Robert Afasizhev, N. O. Dranenko, N. Alexeev, M. Gelfand, O. Bochkareva

Frontiers in Microbiology, 2021

A recently isolated human commensal Escherichia coli ST10 clone member mediates enhanced thermotolerance and tetrathionate respiration on a P1 phage‐derived IncY plasmid

S. Kamal, Annika Cimdins-Ahne, Changhan Lee, Fengyang Li, A. J. Martín–Rodríguez, Z. Seferbekova, Robert Afasizhev, Haleluya Tesfaye Wami, Panagiotis Katikaridis, Lena Meins, H. Lünsdorf, U. Dobrindt, A. Mogk, U. Römling

Molecular Microbiology, 2020

Glycation, glycolysis, and neurodegenerative diseases: Is there any connection?

V. Muronetz, A. Melnikova, Z. N. Seferbekova, K. Barinova, E. Schmalhausen

Biochemistry (Moscow), 2017